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ABOUT THIS RECORD

ID: MNEST041906
species: Oryza sativa
miRNA family: MIR156
source: miRBase, original name: osa-MIR156c (MI0000655)

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGACAGAAGAGAGTGAGCAC

miRNA*
 GCTCACTTCTCTCTCTGTCAGC

mismatches: 0
bulges: 2
View larger
pre-miRNA
 GGAGGAAGAGAGGGGTGAGAGGTGAGGCTGACAGAAGAGAGTGAGCACACATGGTGACTTTCTTGCATGCTGAATGGACTCATGCTTGAAGCTATGTGTG
CTCACTTCTCTCTCTGTCAGCCATTTGATCTCTCTTTCTCTCTTTCTCC

dot-bracket secondary structure
((((((((((((..(.(((((((.(((((((((((((((((((((((((((((((....(((..(((((..(......).)))))..)))))))))))))
))))).))))).))))))))))...).))))))))..))))))))))))


SIMILARITIES
miRBase aly-MIR156f: 6e-22

PMRD osa-miR156c: 2e-55

microPC miR156: 0.000000000000008		UniProt no hits

RFAM mir-156: 5e-38

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence

references
[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"



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