miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Oryza sativa
ABOUT THIS RECORD
ID:
MNEST041906
species:
Oryza sativa
miRNA family:
MIR156
source:
miRBase, original name:
osa-MIR156c
(
MI0000655
)
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGTGAGCAC
miRNA*
GCTCACTTCTCTCTCTGTCAGC
mismatches:
0
bulges:
2
View larger
pre-miRNA
GGAGGAAGAGAGGGGTGAGAGGTGAGGC
TGACAGAAGAGAGTGAGCAC
ACATGGTGACTTTCTTGCATGCTGAATGGACTCATGCTTGAAGCTATGTGT
G
CTCACTTCTCTCTCTGTCAGC
CATTTGATCTCTCTTTCTCTCTTTCTCC
dot-bracket secondary structure
((((((((((((..(.(((((((.((((
((((((((((((((((((((
(((((((....(((..(((((..(......).)))))..))))))))))))
)
))))).))))).)))))))))
)...).))))))))..))))))))))))
SIMILARITIES
miRBase
aly-MIR156f
:
6e-22
PMRD
osa-miR156c
:
2e-55
microPC
miR156
:
0.000000000000008
UniProt
no hits
RFAM
mir-156: 5e-38
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record
deep sequencing data evidence
references
[
1
] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP,
Genes Dev. 16:1616-1626(2002).
,
"MicroRNAs in plants"