ABOUT THIS RECORDspecies: Oryza sativa
source: miRBase, original name: osa-MIR168b (MI0001116)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGCTTGGTGCAGCTCGGGAA miRNA* CCTGTGTTGTGGCATTCCTCC mismatches: 5 bulges: 0 |
pre-miRNA
TGGTCTTGTGAGGCTTGGTGCAGCTCGGGAACTGTTCTTGATGGACTGGCAGGAACTCCATGTCCACCACTGCCACTCCTGTGTTGTGGCATTCCTCCTT
GCCGTT
dot-bracket secondary structure
.(((...(.((((..((.((((((.(((((...((...((.((((((((.((...))))).))))).))..))...))))).)))))).))..)))))..
)))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
TGGTCTTGTGAGGCTTGGTGCAGCTCGGGAACTGTTCTTGATGGACTGGCAGGAACTCCATGTCCACCACTGCCACTCCTGTGTTGTGGCATTCCTCCTT
GCCGTT
dot-bracket secondary structure
.(((...(.((((..((.((((((.(((((...((...((.((((((((.((...))))).))))).))..))...))))).)))))).))..)))))..
)))...
SIMILARITIES| miRBase no hits PMRD osa-miR168b: 2e-55 microPC miR168: 0.0003 | UniProt sp|Q6EU14|AGO1A_ORYSJ: 0.0000000000001 RFAM no hits |
Identical with: osa-miR168b from PMRD (MNEST048874) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
