miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST041963
species: Oryza sativa
source: miRBase, original name: osa-MIR168b (MI0001116)

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGGCTTGGTGCAGCTCGGGAA

miRNA*
 CCTGTGTTGTGGCATTCCTCC

mismatches: 5
bulges: 0
View larger
pre-miRNA
 TGGTCTTGTGAGGCTTGGTGCAGCTCGGGAACTGTTCTTGATGGACTGGCAGGAACTCCATGTCCACCACTGCCACTCCTGTGTTGTGGCATTCCTCCTT
GCCGTT

dot-bracket secondary structure
.(((...(.((((..((.((((((.(((((...((...((.((((((((.((...))))).))))).))..))...))))).)))))).))..)))))..
)))...


SIMILARITIES
miRBase no hits

PMRD osa-miR168b: 2e-55

microPC miR168: 0.0003		UniProt sp|Q6EU14|AGO1A_ORYSJ: 0.0000000000001

RFAM no hits

Identical with: osa-miR168b from PMRD (MNEST048874)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
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references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"



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