ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR806
source: miRBase, original name: osa-MIR1884a (MI0008246)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGACGCCGTTGACTTTTCAT miRNA* AAAAAGTCAACGGTGTCATACA mismatches: 2 bulges: 0 |
pre-miRNA
TCAAAATGTGTGACGCCGTTGACTTTTCATACAACGTTTGACCATTCGTCTTATTCAAAAATTTAACATAAATATGTAAAAGTATAAGTTAAGATTACAT
TTTATTTGATGATAAAACAAGTTACAATAAAATAAATGATATTTATATAACTTTTTTGAATAAGATGAATGGTCAAACGTTATGCAAAAAGTCAACGGTG
TCATACATTTTGAA
dot-bracket secondary structure
(((((((((((((((((((((((((((..((.(((((((((((((((((((((((((((((....((((....))))....((((((((.........((
((((((((((..........)))).)))))))).......))))))))....))))))))))))))))))))))))))))).))..))))))))))))))
))))))))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"
TCAAAATGTGTGACGCCGTTGACTTTTCATACAACGTTTGACCATTCGTCTTATTCAAAAATTTAACATAAATATGTAAAAGTATAAGTTAAGATTACAT
TTTATTTGATGATAAAACAAGTTACAATAAAATAAATGATATTTATATAACTTTTTTGAATAAGATGAATGGTCAAACGTTATGCAAAAAGTCAACGGTG
TCATACATTTTGAA
dot-bracket secondary structure
(((((((((((((((((((((((((((..((.(((((((((((((((((((((((((((((....((((....))))....((((((((.........((
((((((((((..........)))).)))))))).......))))))))....))))))))))))))))))))))))))))).))..))))))))))))))
))))))))))))).
SIMILARITIES| miRBase osa-MIR1884b: 0.00000000005 PMRD osa-miR1884a: 1e-119 microPC miR1884: 2e-19 | UniProt sp|P0C282|SAP18_ORYSJ: 0.000001 RFAM MIR806: 2e-118 |
Identical with: osa-miR1884a from PMRD (MNEST049189) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"
