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Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042313
species: Oryza sativa
miRNA family: MIR806
source: miRBase, original name: osa-MIR1884a (MI0008246)

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGTGACGCCGTTGACTTTTCAT

miRNA*
 AAAAAGTCAACGGTGTCATACA

mismatches: 2
bulges: 0
View larger
pre-miRNA
 TCAAAATGTGTGACGCCGTTGACTTTTCATACAACGTTTGACCATTCGTCTTATTCAAAAATTTAACATAAATATGTAAAAGTATAAGTTAAGATTACAT
TTTATTTGATGATAAAACAAGTTACAATAAAATAAATGATATTTATATAACTTTTTTGAATAAGATGAATGGTCAAACGTTATGCAAAAAGTCAACGGTG
TCATACATTTTGAA

dot-bracket secondary structure
(((((((((((((((((((((((((((..((.(((((((((((((((((((((((((((((....((((....))))....((((((((.........((
((((((((((..........)))).)))))))).......))))))))....))))))))))))))))))))))))))))).))..))))))))))))))
))))))))))))).


SIMILARITIES
miRBase osa-MIR1884b: 0.00000000005

PMRD osa-miR1884a: 1e-119

microPC miR1884: 2e-19		UniProt sp|P0C282|SAP18_ORYSJ: 0.000001

RFAM MIR806: 2e-118

Identical with: osa-miR1884a from PMRD (MNEST049189)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence

references
[1] Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"



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