ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR162
source: miRBase, original name: sbi-MIR162 (MI0013252)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGATAAACCTCTGCATCCAG miRNA* GGGCGCAGTGGTTTATCGATC mismatches: 5 bulges: 0 |
pre-miRNA
GGGCGCAGTGGTTTATCGATCTCTTCCTTGCCTTGTGCTAGTCCAGAAGTAGTGGTGGTTCAAGCGTTTATTGCTGCAATAACTTGCAAAACAACGCGGG
AATCGATCGATAAACCTCTGCATCCAG
dot-bracket secondary structure
((..((((.((((((((((((..(((((.((.((((((.(((......((((..((((.........))))..))))....))).))...)))).)))))
))..)))))))))))).))))..))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
GGGCGCAGTGGTTTATCGATCTCTTCCTTGCCTTGTGCTAGTCCAGAAGTAGTGGTGGTTCAAGCGTTTATTGCTGCAATAACTTGCAAAACAACGCGGG
AATCGATCGATAAACCTCTGCATCCAG
dot-bracket secondary structure
((..((((.((((((((((((..(((((.((.((((((.(((......((((..((((.........))))..))))....))).))...)))).)))))
))..)))))))))))).))))..))..
SIMILARITIES| miRBase zma-MIR162: 1e-28 PMRD zma-miR162b: 1e-28 microPC miR162: 0.0000000000004 | UniProt no hits RFAM MIR162_2: 1e-66 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
