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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042502
species: Sorghum bicolor
miRNA family: MIR162
source: miRBase, original name: sbi-MIR162 (MI0013252)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGATAAACCTCTGCATCCAG

miRNA*
GGGCGCAGTGGTTTATCGATC

mismatches: 5
bulges: 0

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pre-miRNA
GGGCGCAGTGGTTTATCGATCTCTTCCTTGCCTTGTGCTAGTCCAGAAGTAGTGGTGGTTCAAGCGTTTATTGCTGCAATAACTTGCAAAACAACGCGGG
AATCGATCGATAAACCTCTGCATCCAG


dot-bracket secondary structure
((..((((.((((((((((((..(((((.((.((((((.(((......((((..((((.........))))..))))....))).))...)))).)))))
))..)))))))))))).))))..))..



SIMILARITIES
miRBase zma-MIR162: 1e-28

PMRD zma-miR162b: 1e-28

microPC miR162: 0.0000000000004
UniProt no hits

RFAM MIR162_2: 1e-66

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"




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