ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR169
source: miRBase, original name: sbi-MIR169m (MI0010878)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCTA miRNA* GGCAGTCTCCTTGGCTAGC mismatches: 0 bulges: 2 |
pre-miRNA
CTAGCCAAGGATGACTTGCCTATATCCTCTCTAAAGGATCAGCAAATATTGAGGCTTCTAGTGGTCTCATATGGGCAGTCTCCTTGGCTAGCC
dot-bracket secondary structure
)((((((((((.((((.(((((((((((......))))...........(((((((......))))))))))))))))))))))))))))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"
CTAGCCAAGGATGACTTGCCTATATCCTCTCTAAAGGATCAGCAAATATTGAGGCTTCTAGTGGTCTCATATGGGCAGTCTCCTTGGCTAGCC
dot-bracket secondary structure
)((((((((((.((((.(((((((((((......))))...........(((((((......))))))))))))))))))))))))))))...
SIMILARITIES| miRBase sbi-MIR169n: 9.0E-29 PMRD sbi-miR169m: 3.0E-47 microPC miR169: 2.0E-45 | UniProt no hits RFAM 5MIR169_5: 5.0E-46 |
Identical with: miR169 from microPC (MNEST044953), sbi-miR169m from PMRD , miR169 from microPC |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"
