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Species belonging to selected taxon:

Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042541
species: Sorghum bicolor
miRNA family: MIR169
source: miRBase, original name: sbi-MIR169m (MI0010878)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAGCCAAGGATGACTTGCCTA

miRNA*
GGCAGTCTCCTTGGCTAGC

mismatches: 0
bulges: 2

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pre-miRNA
TAGCCAAGGATGACTTGCCTATATCCTCTCTAAAGGATCAGCAAATATTGAGGCTTCTAGTGGTCTCATATGGGCAGTCTCCTTGGCTAGCC

dot-bracket secondary structure
((((((((((.((((.(((((((((((......))))...........(((((((......))))))))))))))))))))))))))))...


SIMILARITIES
miRBase sbi-MIR169n: 9e-29

PMRD sbi-miR169m: 3e-47

microPC miR169: 2e-45
UniProt no hits

RFAM MIR169_5: 5e-46

Identical with: miR169 from microPC (MNEST044953)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"




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