ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR169
source: miRBase, original name: sbi-MIR169p (MI0013254)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGAATGGCTTGCCTA miRNA* GCAGCCCTTCTGGCTAAG mismatches: 2 bulges: 2 |
pre-miRNA
TTAGCCAAGAATGGCTTGCCTATCTCCATTATTTGGTTCATCAGAGGGACCTCTGATCCCTCATGATGGATGAAATGTGGATGATGGCAGCCCTTCTGGC
TAAGT
dot-bracket secondary structure
(((((((.(((.((((.(((.((((((((.((((.((((((((((((((.......)))))).)))))))).))))))))).)))))))))).)))))))
)))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
TTAGCCAAGAATGGCTTGCCTATCTCCATTATTTGGTTCATCAGAGGGACCTCTGATCCCTCATGATGGATGAAATGTGGATGATGGCAGCCCTTCTGGC
TAAGT
dot-bracket secondary structure
(((((((.(((.((((.(((.((((((((.((((.((((((((((((((.......)))))).)))))))).))))))))).)))))))))).)))))))
)))..
SIMILARITIES| miRBase osa-MIR1430: 0.000000000000001 PMRD osa-miR1430: 0.000000000000001 microPC miR1430: 0.000000000000001 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
