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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042544
species: Sorghum bicolor
miRNA family: MIR169
source: miRBase, original name: sbi-MIR169p (MI0013254)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAGCCAAGAATGGCTTGCCTA

miRNA*
GCAGCCCTTCTGGCTAAG

mismatches: 2
bulges: 2

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pre-miRNA
TTAGCCAAGAATGGCTTGCCTATCTCCATTATTTGGTTCATCAGAGGGACCTCTGATCCCTCATGATGGATGAAATGTGGATGATGGCAGCCCTTCTGGC
TAAG
T


dot-bracket secondary structure
(((((((.(((.((((.(((.((((((((.((((.((((((((((((((.......)))))).)))))))).))))))))).)))))))))).)))))))
))).
.



SIMILARITIES
miRBase osa-MIR1430: 0.000000000000001

PMRD osa-miR1430: 0.000000000000001

microPC miR1430: 0.000000000000001
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"




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