ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR396
source: miRBase, original name: sbi-MIR396d (MI0010897)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCCACAGGCTTTCTTGAACTG miRNA* GTTCAAGAAAGTCCTTGGAA mismatches: 3 bulges: 0 |
pre-miRNA
CTCCACAGGCTTTCTTGAACTGTGAACTCGATCGCGTGCTCTTAGCTTGCTTGCTCTCGCTCGCTTTGTGTTGATGGTTCAAGAAAGTCCTTGGAA
dot-bracket secondary structure
.((((..((((((((((((((((.(((.(((..(((.((....(((......)))...)).))).))).))).))))))))))))))))..)))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Ware D, Unpublished (2009).,
CTCCACAGGCTTTCTTGAACTGTGAACTCGATCGCGTGCTCTTAGCTTGCTTGCTCTCGCTCGCTTTGTGTTGATGGTTCAAGAAAGTCCTTGGAA
dot-bracket secondary structure
.((((..((((((((((((((((.(((.(((..(((.((....(((......)))...)).))).))).))).))))))))))))))))..)))).
SIMILARITIES| miRBase far-MIR396: 0.00000000008 PMRD far-miR396: 0.00000000008 microPC miR396: 0.0000000003 | UniProt no hits RFAM MIR396: 2e-48 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Ware D, Unpublished (2009).,
