miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor

ABOUT THIS RECORD

ID: MNEST042585
species: Sorghum bicolor
miRNA family: MIR396
source: miRBase, original name: sbi-MIR396d (MI0010897)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
CTCCACAGGCTTTCTTGAACTG

miRNA*
GTTCAAGAAAGTCCTTGGAA

mismatches: 3
bulges: 0

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pre-miRNA
CTCCACAGGCTTTCTTGAACTGTGAACTCGATCGCGTGCTCTTAGCTTGCTTGCTCTCGCTCGCTTTGTGTTGATGGTTCAAGAAAGTCCTTGGAA

dot-bracket secondary structure
.((((..((((((((((((((((.(((.(((..(((.((....(((......)))...)).))).))).))).))))))))))))))))..)))).

UniProt no hits

RFAM MIR396: 2e-48

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Zhang L, Ware D, Unpublished (2009).,