ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR396
source: miRBase, original name: sbi-MIR396e (MI0010898)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGGCTTTCTTGAACTG miRNA* GTTCAAGAAAGCCCATGGAAAC mismatches: 2 bulges: 0 |
pre-miRNA
TTTCCACAGGCTTTCTTGAACTGTGAACTCGTGGGGGTAGAAACCTTGCTGGGTTTGGTTCCCATGTCGGATGGAATGCTTGGCTCCTCCCAGCGATTCT
TCCCCGGCCGTGAGTGAATTGAATTGCGGGGTTTCTCGCTTCGCTCGGCCGGCTCTACCTGTTGATGGTTCAAGAAAGCCCATGGAAAC
dot-bracket secondary structure
((((((..((((((((((((((((.(((.((((((..(..((((((....)))))).)..))))))..(((.((((((((.((.....)).))).)))))
)))((((((..(((((((.......(((((....))))))))))))))))))........))).))))))))))))))))..)))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"
TTTCCACAGGCTTTCTTGAACTGTGAACTCGTGGGGGTAGAAACCTTGCTGGGTTTGGTTCCCATGTCGGATGGAATGCTTGGCTCCTCCCAGCGATTCT
TCCCCGGCCGTGAGTGAATTGAATTGCGGGGTTTCTCGCTTCGCTCGGCCGGCTCTACCTGTTGATGGTTCAAGAAAGCCCATGGAAAC
dot-bracket secondary structure
((((((..((((((((((((((((.(((.((((((..(..((((((....)))))).)..))))))..(((.((((((((.((.....)).))).)))))
)))((((((..(((((((.......(((((....))))))))))))))))))........))).))))))))))))))))..)))))).
SIMILARITIES| miRBase osa-MIR396e: 0.00000000000001 PMRD sbi-miR396e: 8e-105 microPC miR396: 0.0000000002 | UniProt no hits RFAM MIR396: 2e-103 |
Identical with: sbi-miR396e from PMRD (MNEST054488) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"
