miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Panicum virgatum, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Cenchrus ciliaris, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042586
species: Sorghum bicolor
miRNA family: MIR396
source: miRBase, original name: sbi-MIR396e (MI0010898)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTCCACAGGCTTTCTTGAACTG

miRNA*
GTTCAAGAAAGCCCATGGAAAC

mismatches: 2
bulges: 0

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pre-miRNA
TTTCCACAGGCTTTCTTGAACTGTGAACTCGTGGGGGTAGAAACCTTGCTGGGTTTGGTTCCCATGTCGGATGGAATGCTTGGCTCCTCCCAGCGATTCT
TCCCCGGCCGTGAGTGAATTGAATTGCGGGGTTTCTCGCTTCGCTCGGCCGGCTCTACCTGTTGATGGTTCAAGAAAGCCCATGGAAAC


dot-bracket secondary structure
((((((..((((((((((((((((.(((.((((((..(..((((((....)))))).)..))))))..(((.((((((((.((.....)).))).)))))
)))((((((..(((((((.......(((((....))))))))))))))))))........))).))))))))))))))))..)))))).



SIMILARITIES
miRBase osa-MIR396e: 0.00000000000001

PMRD sbi-miR396e: 8e-105

microPC miR396: 0.0000000002
UniProt no hits

RFAM MIR396: 2e-103

Identical with: sbi-miR396e from PMRD (MNEST054488)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"




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