ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR408
source: miRBase, original name: tae-MIR408 (MI0006177)
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGCACTGCCTCTTCCCTGGC miRNA* AAGGGATGAGGCAAGCAACAAAATTTACCACCTGATTATGAGAAGAGGG mismatches: 3 bulges: 30 |
pre-miRNA
ATTTTGTGAGTGGAGAGGGGGGAGGAGACAGGGATGGAGCAGAGCAAGGGATGAGGCAAGCAACAAAATTTACCACCTGATTATGAGAAGAGGGAGAGAG
TTGCCAGAGCTTCTGTTGCTGTTGTTGCTCCCTCCCTGCACTGCCTCTTCCCTGGCTCCCCTCCCAAATCTCTCCCTCCCCCTCTCT
dot-bracket secondary structure
...........((((((((((..(((((..((((.((....((((.(((((.((((((.((..((.((((........)))).)).....((((((.(((
(.((.(.(((.......))).).)).)))).))))))))..)))))).))))).)))))).)))).....)))))..))))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: cloned
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
ATTTTGTGAGTGGAGAGGGGGGAGGAGACAGGGATGGAGCAGAGCAAGGGATGAGGCAAGCAACAAAATTTACCACCTGATTATGAGAAGAGGGAGAGAG
TTGCCAGAGCTTCTGTTGCTGTTGTTGCTCCCTCCCTGCACTGCCTCTTCCCTGGCTCCCCTCCCAAATCTCTCCCTCCCCCTCTCT
dot-bracket secondary structure
...........((((((((((..(((((..((((.((....((((.(((((.((((((.((..((.((((........)))).)).....((((((.(((
(.((.(.(((.......))).).)).)))).))))))))..)))))).))))).)))))).)))).....)))))..))))))))))
SIMILARITIES| miRBase sof-MIR408e: 0.00000001 PMRD tae-miR408: 8e-68 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: cloned
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
