miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042647
species: Triticum aestivum
miRNA family: MIR408
source: miRBase, original name: tae-MIR408 (MI0006177)

Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CTGCACTGCCTCTTCCCTGGC

miRNA*
 AAGGGATGAGGCAAGCAACAAAATTTACCACCTGATTATGAGAAGAGGG

mismatches: 3
bulges: 30
View larger
pre-miRNA
 ATTTTGTGAGTGGAGAGGGGGGAGGAGACAGGGATGGAGCAGAGCAAGGGATGAGGCAAGCAACAAAATTTACCACCTGATTATGAGAAGAGGGAGAGAG
TTGCCAGAGCTTCTGTTGCTGTTGTTGCTCCCTCCCTGCACTGCCTCTTCCCTGGCTCCCCTCCCAAATCTCTCCCTCCCCCTCTCT

dot-bracket secondary structure
...........((((((((((..(((((..((((.((....((((.(((((.((((((.((..((.((((........)))).)).....((((((.(((
(.((.(.(((.......))).).)).)))).))))))))..)))))).))))).)))))).)))).....)))))..))))))))))


SIMILARITIES
miRBase sof-MIR408e: 0.00000001

PMRD tae-miR408: 8e-68

microPC no hits		UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: cloned

references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"



Liczniki na strone;