ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR1119
source: miRBase, original name: tae-MIR1119 (MI0006181)
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGCACGGCGTGATGCTGAGTCAG miRNA* GGGTCAGCGTCGACGGCGGCGGCCGTG mismatches: 3 bulges: 3 |
pre-miRNA
AGCGTCAGCGTGTGAGGCGCCAGCGCGCGCGGAGGAGGAGCTGGCTGGGTCAGCGTCGACGGCGGCGGCCGTGTGCTCCTACGTGGCACGGCGTGATGCT
GAGTCAGCCAGTGGAGTGGTGCTACTTTTTACTAGGTGTGGAGTGGGAGTGCTATGCGCGGGGTCGCGTGACGTGG
dot-bracket secondary structure
.((((((.((((......(((..(((((...........(((((((((.((((((((.(((.((...((((((((....)))))))).)).)))))))))
)).)))))))))..((((.(.((((((..(((...)))..)))))).).))))..))))).)))))))))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
AGCGTCAGCGTGTGAGGCGCCAGCGCGCGCGGAGGAGGAGCTGGCTGGGTCAGCGTCGACGGCGGCGGCCGTGTGCTCCTACGTGGCACGGCGTGATGCT
GAGTCAGCCAGTGGAGTGGTGCTACTTTTTACTAGGTGTGGAGTGGGAGTGCTATGCGCGGGGTCGCGTGACGTGG
dot-bracket secondary structure
.((((((.((((......(((..(((((...........(((((((((.((((((((.(((.((...((((((((....)))))))).)).)))))))))
)).)))))))))..((((.(.((((((..(((...)))..)))))).).))))..))))).)))))))))))))..
SIMILARITIES| miRBase far-MIR1119: 0.000000000002 PMRD tae-miR1119: 2e-90 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
