miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042652
species: Triticum aestivum
miRNA family: MIR1119
source: miRBase, original name: tae-MIR1119 (MI0006181)

Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGGCACGGCGTGATGCTGAGTCAG

miRNA*
 GGGTCAGCGTCGACGGCGGCGGCCGTG

mismatches: 3
bulges: 3
View larger
pre-miRNA
 AGCGTCAGCGTGTGAGGCGCCAGCGCGCGCGGAGGAGGAGCTGGCTGGGTCAGCGTCGACGGCGGCGGCCGTGTGCTCCTACGTGGCACGGCGTGATGCT
GAGTCAGCCAGTGGAGTGGTGCTACTTTTTACTAGGTGTGGAGTGGGAGTGCTATGCGCGGGGTCGCGTGACGTGG

dot-bracket secondary structure
.((((((.((((......(((..(((((...........(((((((((.((((((((.(((.((...((((((((....)))))))).)).)))))))))
)).)))))))))..((((.(.((((((..(((...)))..)))))).).))))..))))).)))))))))))))..


SIMILARITIES
miRBase far-MIR1119: 0.000000000002

PMRD tae-miR1119: 2e-90

microPC no hits		UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"



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