ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR408
source: miRBase, original name: zma-MIR408b (MI0013237)
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGCACTGCCTCTTCCCTGGC miRNA* CAGGGACGAGGCAGAGCATGG mismatches: 5 bulges: 0 |
pre-miRNA
GACAGGGACGAGGCAGAGCATGGGTAGGGGGCCATCAACAGAATTCCAAATTTGATTTCTGTTTGCTCGCTCACAAAATGGAGGGACTCACCACAAACAC
ACTCAGGCGTTGTTGCTCCCTCCCCTGCACTGCCTCTTCCCTGGCTC
dot-bracket secondary structure
..((((((.(((((((.(((.(((.(((((((...((((.(((.((.......)).))).(((((.((.(((........))).)).......)))))..
........))))..)))))))))).))).))))))).))))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
GACAGGGACGAGGCAGAGCATGGGTAGGGGGCCATCAACAGAATTCCAAATTTGATTTCTGTTTGCTCGCTCACAAAATGGAGGGACTCACCACAAACAC
ACTCAGGCGTTGTTGCTCCCTCCCCTGCACTGCCTCTTCCCTGGCTC
dot-bracket secondary structure
..((((((.(((((((.(((.(((.(((((((...((((.(((.((.......)).))).(((((.((.(((........))).)).......)))))..
........))))..)))))))))).))).))))))).))))))....
SIMILARITIES| miRBase zma-MIR408: 0.000000000000002 PMRD zma-miR408: 0.000000000000002 microPC miR408: 0.0001 | UniProt no hits RFAM MIR408: 1e-78 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
