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Species belonging to selected taxon:
Zea mays
ABOUT THIS RECORD
ID:
MNEST042830
species:
Zea mays
miRNA family:
MIR408
source:
miRBase, original name:
zma-MIR408b
(
MI0013237
)
Taxonomy by NCBI:
Zea mays
Zea
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CTGCACTGCCTCTTCCCTGGC
miRNA*
CAGGGACGAGGCAGAGCATGG
mismatches:
5
bulges:
0
View larger
pre-miRNA
GA
CAGGGACGAGGCAGAGCATGG
GTAGGGGGCCATCAACAGAATTCCAAATTTGATTTCTGTTTGCTCGCTCACAAAATGGAGGGACTCACCACAAACAC
ACTCAGGCGTTGTTGCTCCCTCCC
CTGCACTGCCTCTTCCCTGGC
TC
dot-bracket secondary structure
..
((((((.(((((((.(((.((
(.(((((((...((((.(((.((.......)).))).(((((.((.(((........))).)).......)))))..
........))))..))))))))))
.))).))))))).))))))..
..
SIMILARITIES
miRBase
zma-MIR408
:
0.000000000000002
PMRD
zma-miR408
:
0.000000000000002
microPC
miR408
:
0.0001
UniProt
no hits
RFAM
MIR408: 1e-78
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
Solexa
references
[
1
] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D,
PLoS Genet. 5:e1000716(2009).
,
"A genome-wide characterization of microRNA genes in maize"