ABOUT THIS RECORDspecies: Schistosoma japonicum
source: Huang et al., original name: sja-miR-125
Taxonomy by NCBI:
Schistosoma japonicum Schistosoma Schistosomatidae Schistosomatoidea Strigeidida Digenea Trematoda Platyhelminthes Acoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCCTGAGACTGATAATTGCT miRNA* CAATTATTATTCTCAGGTGTA mismatches: 3 bulges: 0 |
pre-miRNA
ATGAATAAAATCCCTGAGACTGATAATTGCTCTAGTTATTATATCATTAATGAGTTTACAATAAGGGCAATTATTATTCTCAGGTGTATCATTCATGA
dot-bracket secondary structure
((((((.(.(..(((((((.(((((((((((((.(((......(((....)))......))).))))))))))))).)))))))..).).))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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ATGAATAAAATCCCTGAGACTGATAATTGCTCTAGTTATTATATCATTAATGAGTTTACAATAAGGGCAATTATTATTCTCAGGTGTATCATTCATGA
dot-bracket secondary structure
((((((.(.(..(((((((.(((((((((((((.(((......(((....)))......))).))))))))))))).)))))))..).).))))))..
SIMILARITIES| miRBase sja-mir-125b: 7e-39 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: sja-Novel-148 from Hao et al. (MNEST044208) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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