ABOUT THIS RECORDspecies: Schistosoma japonicum
source: Huang et al., original name: sja-miR-3031
Taxonomy by NCBI:
Schistosoma japonicum Schistosoma Schistosomatidae Schistosomatoidea Strigeidida Digenea Trematoda Platyhelminthes Acoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATCCGTGCTGAGATTTCGTCT miRNA* ATGAGACTCCACAGATAC mismatches: 2 bulges: 3 |
pre-miRNA
AGCTTCCTGTATCCGTGCTGAGATTTCGTCTGTCACCAGGCCACCAGCACTGATGAGACTCCACAGATACGTGAAGCG
dot-bracket secondary structure
.(((((.((((((.(((..(((.(((((((.((......((.....)))).))))))))))))).)))))).))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AGCTTCCTGTATCCGTGCTGAGATTTCGTCTGTCACCAGGCCACCAGCACTGATGAGACTCCACAGATACGTGAAGCG
dot-bracket secondary structure
.(((((.((((((.(((..(((.(((((((.((......((.....)))).))))))))))))).)))))).))))).
SIMILARITIES| miRBase sja-mir-3492: 5e-39 PMRD no hits microPC no hits | UniProt no hits RFAM Hammerhead_1: 0.000001 |
Identical with: sja-mir-3492 from miRBase (MNEST039015) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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