ABOUT THIS RECORDspecies: Citrus sinensis
source: microPC, original name: miR164
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGAAGCAGGGCACGTGC miRNA* ATGTGCCCTTCTTCCCCA mismatches: 4 bulges: 0 |
pre-miRNA
TGGAGAAGCAGGGCACGTGCATTACTAACTCAACCGCACATACATCTACTAACAAAAATTAATTAATCCACACATTTTGAAGAAACCAAATCAAGAAGCA
GCAAGCTCTTTCTGTTGTTATAGCTCAGTCATGAGTTGAGTTATTTCTTCATGTGCCCTTCTTCCCCA
dot-bracket secondary structure
.((.((((.((((((((((......(((((((((...........(((.((((((....................((((.......))))...(((((.(
(....)).))))).)))))))))...........)))))))))......)))))))))).)))).)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGGAGAAGCAGGGCACGTGCATTACTAACTCAACCGCACATACATCTACTAACAAAAATTAATTAATCCACACATTTTGAAGAAACCAAATCAAGAAGCA
GCAAGCTCTTTCTGTTGTTATAGCTCAGTCATGAGTTGAGTTATTTCTTCATGTGCCCTTCTTCCCCA
dot-bracket secondary structure
.((.((((.((((((((((......(((((((((...........(((.((((((....................((((.......))))...(((((.(
(....)).))))).)))))))))...........)))))))))......)))))))))).)))).)).
SIMILARITIES| miRBase csi-MIR164: 2e-92 PMRD csi-miR164: 2e-92 microPC miR164: 2e-92 | UniProt no hits RFAM MIR164: 0.0000000007 |
Identical with: csi-MIR164 from miRBase (MNEST041221) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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