miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST044832
species: Citrus sinensis
source: microPC, original name: miR164

Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGGAGAAGCAGGGCACGTGC

miRNA*
 ATGTGCCCTTCTTCCCCA

mismatches: 4
bulges: 0
View larger
pre-miRNA
 TGGAGAAGCAGGGCACGTGCATTACTAACTCAACCGCACATACATCTACTAACAAAAATTAATTAATCCACACATTTTGAAGAAACCAAATCAAGAAGCA
GCAAGCTCTTTCTGTTGTTATAGCTCAGTCATGAGTTGAGTTATTTCTTCATGTGCCCTTCTTCCCCA

dot-bracket secondary structure
.((.((((.((((((((((......(((((((((...........(((.((((((....................((((.......))))...(((((.(
(....)).))))).)))))))))...........)))))))))......)))))))))).)))).)).


SIMILARITIES
miRBase csi-MIR164: 2e-92

PMRD csi-miR164: 2e-92

microPC miR164: 2e-92		UniProt no hits

RFAM MIR164: 0.0000000007

Identical with: csi-MIR164 from miRBase (MNEST041221)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record




Liczniki na strone;