ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR167
source: microPC, original name: miR167
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTG miRNA* GATCATCCTGCGGCTTCA mismatches: 2 bulges: 1 |
pre-miRNA
TGAAGCTGCCAGCATGATCTGATAGTGGTACCAGATCATCCTGCGGCTTCA
dot-bracket secondary structure
.((((((((.((.((((((((..........)))))))).)))))))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGAAGCTGCCAGCATGATCTGATAGTGGTACCAGATCATCCTGCGGCTTCA
dot-bracket secondary structure
.((((((((.((.((((((((..........)))))))).)))))))))).
SIMILARITIES| miRBase ssp-MIR167b: 0.00000003 PMRD ssp-miR167: 0.00000003 microPC miR167: 4e-23 | UniProt no hits RFAM MIR167_1: 0.00004 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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