ABOUT THIS RECORDspecies: Gossypium raimondii
miRNA family: MIR157
source: microPC, original name: miR157
Taxonomy by NCBI:
Gossypium raimondii Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACAGAAGATAGAGAGCAC miRNA* GCTCTTTATGCTTCTGTCA mismatches: 1 bulges: 1 |
pre-miRNA
ATTGACAGAAGATAGAGAGCACAGATGATGGTGTGCAATTAGGAGTCTTGAAGCAATGCATCCCACTCCTTTGTGCTCTTTATGCTTCTGTCA
dot-bracket secondary structure
).(((((((((((((((((((((((.(((((..((((.(((((...))))).....))))..))).)).)))))))))))))).)))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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ATTGACAGAAGATAGAGAGCACAGATGATGGTGTGCAATTAGGAGTCTTGAAGCAATGCATCCCACTCCTTTGTGCTCTTTATGCTTCTGTCA
dot-bracket secondary structure
).(((((((((((((((((((((((.(((((..((((.(((((...))))).....))))..))).)).)))))))))))))).)))))))))
SIMILARITIES| miRBase gra-MIR157a: 3.0E-47 PMRD gra-miR157a: 3.0E-47 microPC miR157: 3.0E-47 | UniProt no hits RFAM no hits |
Identical with: gra-MIR157a from miRBase (MNEST041076), gra-miR157a from PMRD , miR156 from microPC |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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