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Species belonging to selected taxon:
Gossypium arboreum
,
Gossypium hirsutum
,
Gossypium raimondii
,
Theobroma cacao
ABOUT THIS RECORD
ID:
MNEST044919
species:
Gossypium raimondii
miRNA family:
MIR157
source:
microPC, original name:
miR157
Taxonomy by NCBI:
Gossypium raimondii
Gossypium
Malvoideae
Malvaceae
Malvales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGACAGAAGATAGAGAGCAC
miRNA*
GCTCTTTATGCTTCTGTCA
mismatches:
1
bulges:
1
View larger
pre-miRNA
TTGACAGAAGATAGAGAGCAC
AGATGATGGTGTGCAATTAGGAGTCTTGAAGCAATGCATCCCACTCCTTTGT
GCTCTTTATGCTTCTGTCA
dot-bracket secondary structure
.((((((((((((((((((((
(((.(((((..((((.(((((...))))).....))))..))).)).)))))
))))))))).)))))))))
SIMILARITIES
miRBase
gra-MIR157a
:
3e-47
PMRD
gra-miR157a
:
3e-47
microPC
miR157
:
3e-47
UniProt
no hits
RFAM
no hits
Identical with:
gra-MIR157a
from miRBase (
MNEST041076
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
download this record