ABOUT THIS RECORDspecies: Mesembryanthemum crystallinum
miRNA family: MIR396
source: microPC, original name: miR396
Taxonomy by NCBI:
Mesembryanthemum crystallinum Mesembryanthemum Aizoaceae Caryophyllales core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTT miRNA* GTTCAAGAAAGCTGTGGGA mismatches: 0 bulges: 0 |
pre-miRNA
ATTCCACAGCTTTCTTGAACTTTCCGGTTCTTTTCTTCTTTTTTTTTCTTTCTAGTGAGAAACAAACCATCATTGGGAAAGTTCAAGAAAGCTGTGGGA
dot-bracket secondary structure
)((((((((((((((((((((((((((((..((((((((..............)).))))))..)))).......))))))))))))))))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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ATTCCACAGCTTTCTTGAACTTTCCGGTTCTTTTCTTCTTTTTTTTTCTTTCTAGTGAGAAACAAACCATCATTGGGAAAGTTCAAGAAAGCTGTGGGA
dot-bracket secondary structure
)((((((((((((((((((((((((((((..((((((((..............)).))))))..)))).......))))))))))))))))))))))))
SIMILARITIES| miRBase tcc-MIR396c: 5.0E-6 PMRD bna-miR396a: 5.0E-6 microPC miR396: 1.0E-34 | UniProt no hits RFAM 6MIR396: 8.0E-5 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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