ABOUT THIS RECORDspecies: Citrus sinensis
source: microPC, original name: miR390
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGCTATCCATCCTGAGTTTC miRNA* AGCTCAGGAGGGATAGCGCC mismatches: 2 bulges: 0 |
pre-miRNA
AAGCTCAGGAGGGATAGCGCCATGGGTGCCATGAATATGGGAATGATCTAGGGTTTCATGATAAATAATGGGCACTGGCGCTATCCATCCTGAGTTTC
dot-bracket secondary structure
((((((((((.(((((((((((...(((((............((((.........))))...........)))))))))))))))).)))))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AAGCTCAGGAGGGATAGCGCCATGGGTGCCATGAATATGGGAATGATCTAGGGTTTCATGATAAATAATGGGCACTGGCGCTATCCATCCTGAGTTTC
dot-bracket secondary structure
((((((((((.(((((((((((...(((((............((((.........))))...........)))))))))))))))).)))))))))).
SIMILARITIES| miRBase csi-MIR390: 8e-51 PMRD ghr-miR390c: 0.0000003 microPC miR390: 3e-50 | UniProt no hits RFAM MIR390: 0.000005 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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