miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Citrus aurantium
,
Citrus reticulata
,
Citrus sinensis
,
Citrus unshiu
,
Citrus clementina
ABOUT THIS RECORD
ID:
MNEST044966
species:
Citrus sinensis
source:
microPC, original name:
miR390
Taxonomy by NCBI:
Citrus sinensis
Citrus
Rutaceae
Sapindales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CGCTATCCATCCTGAGTTTC
miRNA*
AGCTCAGGAGGGATAGCGCC
mismatches:
2
bulges:
0
View larger
pre-miRNA
A
AGCTCAGGAGGGATAGCGCC
ATGGGTGCCATGAATATGGGAATGATCTAGGGTTTCATGATAAATAATGGGCACTGG
CGCTATCCATCCTGAGTTTC
dot-bracket secondary structure
(
(((((((((.((((((((((
(...(((((............((((.........))))...........))))))))
)))))))).)))))))))).
SIMILARITIES
miRBase
csi-MIR390
:
8e-51
PMRD
ghr-miR390c
:
0.0000003
microPC
miR390
:
3e-50
UniProt
no hits
RFAM
MIR390: 0.000005
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
download this record