miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST045017
species: Nicotiana benthamiana
source: microPC, original name: miR166

Taxonomy by NCBI:
Nicotiana benthamiana Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CGGACCAGGCTTCATTCCC

miRNA*
 GAATGTTGTCTGGCTCGAG

mismatches: 4
bulges: 0
View larger
pre-miRNA
 GGGAATGTTGTCTGGCTCGAGGAATCTTTAATCTTGATCAAATTCTTTACACAGATCTATCTATTATTATATATGTTGCTTATACATTTTAGATCTTATA
TAGATCTATAATTGTTAGTTGTTAGATCTATGAATTTTGATTATATTTTTTTGGGTCGTCGGACCAGGCTTCATTCCC

dot-bracket secondary structure
(((((((..((((((..(((.((.(((..((...((((((((..........(((((((.............((((.......))))..)))))))..((
((((((((((((.....)))).))))))))))...)))))))).....))..))))).)))..))))))..)))))))


SIMILARITIES
miRBase ptc-MIR166c: 0.0000001

PMRD ptc-miRf10467-akr: 0.0000001

microPC miR166: 0.0000001		UniProt no hits

RFAM mir-166: 0.000003

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record




Liczniki na strone;