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Species belonging to selected taxon:

Antirrhinum majus, Coffea canephora, Fraxinus excelsior, Ipomoea batatas, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor, Capsicum annuum, Catharanthus roseus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST045017
species: Nicotiana benthamiana
source: microPC, original name: miR166

Taxonomy by NCBI:
Nicotiana benthamiana Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CGGACCAGGCTTCATTCCC

miRNA*
 GAATGTTGTCTGGCTCGAG

mismatches: 4
bulges: 0
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pre-miRNA
 GGGAATGTTGTCTGGCTCGAGGAATCTTTAATCTTGATCAAATTCTTTACACAGATCTATCTATTATTATATATGTTGCTTATACATTTTAGATCTTATA
TAGATCTATAATTGTTAGTTGTTAGATCTATGAATTTTGATTATATTTTTTTGGGTCGTCGGACCAGGCTTCATTCCC

dot-bracket secondary structure
(((((((..((((((..(((.((.(((..((...((((((((..........(((((((.............((((.......))))..)))))))..((
((((((((((((.....)))).))))))))))...)))))))).....))..))))).)))..))))))..)))))))


SIMILARITIES
miRBase ptc-MIR166c: 0.0000001

PMRD ptc-miRf10467-akr: 0.0000001

microPC miR166: 0.0000001		UniProt no hits

RFAM mir-166: 0.000003

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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