ABOUT THIS RECORDspecies: Populus nigra
miRNA family: MIR162
source: microPC, original name: miR162
Taxonomy by NCBI:
Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGATAAACCTCTGCATCCA miRNA* GAGGCAGCGGTTCATCGATC mismatches: 4 bulges: 0 |
pre-miRNA
TNGGAGGCAGCGGTTCATCGATCTCTTCCTGGCCAATTTTTTGTTTAGCACGAAAAACATGAACCGATCGATAAACCTCTGCATCCA
dot-bracket secondary structure
..(((.((((.((((.(((((((..(((.((.....((((((((.....)))))))))).)))..))))))).)))).)))).))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
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TNGGAGGCAGCGGTTCATCGATCTCTTCCTGGCCAATTTTTTGTTTAGCACGAAAAACATGAACCGATCGATAAACCTCTGCATCCA
dot-bracket secondary structure
..(((.((((.((((.(((((((..(((.((.....((((((((.....)))))))))).)))..))))))).)))).)))).))).
SIMILARITIES| miRBase ptc-MIR162a: 4e-43 PMRD ptc-miRf10578-akr: 4e-43 microPC miR162: 4e-43 | UniProt no hits RFAM MIR162_2: 7e-42 |
MOREmiRNEST target predictions
non-miRNEST targets: none
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