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Species belonging to selected taxon:
Populus deltoides
,
Populus euphratica
,
Populus nigra
,
Populus tremula
,
Populus tremula x Populus alba
,
Populus tremula x Populus tremuloides
,
Populus tremuloides
,
Populus trichocarpa x Populus nigra
,
Populus x canadensis
,
Populus trichocarpa
,
Populus trichocarpa x Populus deltoides
ABOUT THIS RECORD
ID:
MNEST045283
species:
Populus nigra
miRNA family:
MIR162
source:
microPC, original name:
miR162
Taxonomy by NCBI:
Populus nigra
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCGATAAACCTCTGCATCCA
miRNA*
GAGGCAGCGGTTCATCGATC
mismatches:
4
bulges:
0
View larger
pre-miRNA
TNG
GAGGCAGCGGTTCATCGATC
TCTTCCTGGCCAATTTTTTGTTTAGCACGAAAAACATGAACCGA
TCGATAAACCTCTGCATCCA
dot-bracket secondary structure
..(
((.((((.((((.(((((((
..(((.((.....((((((((.....)))))))))).)))..))
))))).)))).)))).))).
SIMILARITIES
miRBase
ptc-MIR162a
:
4e-43
PMRD
ptc-miRf10578-akr
:
4e-43
microPC
miR162
:
4e-43
UniProt
no hits
RFAM
MIR162_2: 7e-42
MORE
miRNEST target predictions
non-miRNEST targets: none
download this record