ABOUT THIS RECORDspecies: Vigna unguiculata
source: microPC, original name: miR1507
Taxonomy by NCBI:
Vigna unguiculata Vigna Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTCATTCCATACATCGTCTGA miRNA* AGAGGTGTATGGAGTGAGAGA mismatches: 1 bulges: 1 |
pre-miRNA
CAGAGGTGTATGGAGTGAGAGAAGGGAAAAACGCCTTTCCCGATCTCATCGGTTCTTTCTTTCCTCTCTCATTCCATACATCGTCTGA
dot-bracket secondary structure
((((((((((((((((((((((.(((((...........(((((...))))).......))))))))))))))))))))))).)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CAGAGGTGTATGGAGTGAGAGAAGGGAAAAACGCCTTTCCCGATCTCATCGGTTCTTTCTTTCCTCTCTCATTCCATACATCGTCTGA
dot-bracket secondary structure
((((((((((((((((((((((.(((((...........(((((...))))).......))))))))))))))))))))))).)))).
SIMILARITIES| miRBase vun-MIR1507b: 7e-45 PMRD vun-miR1507b: 7e-45 microPC miR1507: 7e-45 | UniProt no hits RFAM no hits |
Identical with: vun-miR1507b from PMRD (MNEST054764) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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