ABOUT THIS RECORDspecies: Phaseolus vulgaris
miRNA family: MIR408
source: microPC, original name: miR408
Taxonomy by NCBI:
Phaseolus vulgaris Phaseolus Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCACTGCCTCTTCCCTGGCT miRNA* CTGGGAAAAGGCAGAGCAAG mismatches: 2 bulges: 1 |
pre-miRNA
GGCTGGGAAAAGGCAGAGCAAGAATGTAGCTATTGACAGAAATGGTGAAGTGAGAATGAGAGGAGAGAGATATCTGTTGTGGCTACGCTCATGCACTGCC
TCTTCCCTGGCT
dot-bracket secondary structure
(((((((((.((((((.(((.((.(((((((((.((((((.((..........................)).))))))))))))))).)).))).)))))
).))))).))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGCTGGGAAAAGGCAGAGCAAGAATGTAGCTATTGACAGAAATGGTGAAGTGAGAATGAGAGGAGAGAGATATCTGTTGTGGCTACGCTCATGCACTGCC
TCTTCCCTGGCT
dot-bracket secondary structure
(((((((((.((((((.(((.((.(((((((((.((((((.((..........................)).))))))))))))))).)).))).)))))
).))))).))))
SIMILARITIES| miRBase ahy-MIR408: 0.000000006 PMRD gma-miR408a: 4e-16 microPC miR408: 7e-58 | UniProt no hits RFAM MIR408: 1e-19 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
