miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST045394
species: Phaseolus vulgaris
miRNA family: MIR408
source: microPC, original name: miR408

Taxonomy by NCBI:
Phaseolus vulgaris Phaseolus Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCACTGCCTCTTCCCTGGCT

miRNA*
 CTGGGAAAAGGCAGAGCAAG

mismatches: 2
bulges: 1
View larger
pre-miRNA
 GGCTGGGAAAAGGCAGAGCAAGAATGTAGCTATTGACAGAAATGGTGAAGTGAGAATGAGAGGAGAGAGATATCTGTTGTGGCTACGCTCATGCACTGCC
TCTTCCCTGGCT

dot-bracket secondary structure
(((((((((.((((((.(((.((.(((((((((.((((((.((..........................)).))))))))))))))).)).))).)))))
).))))).))))


SIMILARITIES
miRBase ahy-MIR408: 0.000000006

PMRD gma-miR408a: 4e-16

microPC miR408: 7e-58		UniProt no hits

RFAM MIR408: 1e-19

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record




Liczniki na strone;