ABOUT THIS RECORDspecies: Raphanus raphanistrum subsp. maritimus
miRNA family: MIR162
source: microPC, original name: miR162
Taxonomy by NCBI:
Raphanus raphanistrum subsp. maritimus Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGATAAACCTCTGCATCCA miRNA* GAGGCAGCGGTTCATCGATC mismatches: 4 bulges: 0 |
pre-miRNA
ATGGAGGCAGCGGTTCATCGATCTCTTCCTGTGGATTTTTTTGTTTGTTTCTTTGTTGTTGTTGGAAAGAGATTAAAAGCACGAACAGATCGATAAACCTC
TGCATCCA
dot-bracket secondary structure
).(((.((((.((((.((((((((.(((..(((..((((...((((.(((((...........))))).)))).)))).)))))).)))))))).)))).)
))).))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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ATGGAGGCAGCGGTTCATCGATCTCTTCCTGTGGATTTTTTTGTTTGTTTCTTTGTTGTTGTTGGAAAGAGATTAAAAGCACGAACAGATCGATAAACCTC
TGCATCCA
dot-bracket secondary structure
).(((.((((.((((.((((((((.(((..(((..((((...((((.(((((...........))))).)))).)))).)))))).)))))))).)))).)
))).))).
SIMILARITIES| miRBase ath-MIR162a: 2.0E-11 PMRD ath-miR162a: 2.0E-11 microPC miR162: 4.0E-19 | UniProt no hits RFAM 2MIR162_2: 4.0E-10 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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