miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea

ABOUT THIS RECORD

ID: MNEST045508
species: Raphanus raphanistrum subsp. maritimus
miRNA family: MIR162
source: microPC, original name: miR162

Taxonomy by NCBI:
Raphanus raphanistrum subsp. maritimus Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TCGATAAACCTCTGCATCCA

miRNA*
GAGGCAGCGGTTCATCGATC

mismatches: 4
bulges: 0

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pre-miRNA
TGGAGGCAGCGGTTCATCGATCTCTTCCTGTGGATTTTTTTGTTTGTTTCTTTGTTGTTGTTGGAAAGAGATTAAAAGCACGAACAGATCGATAAACCTC
TGCATCCA

dot-bracket secondary structure
.(((.((((.((((.((((((((.(((..(((..((((...((((.(((((...........))))).)))).)))).)))))).)))))))).)))).)
))).))).

UniProt no hits

RFAM MIR162_2: 0.0000000004

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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