ABOUT THIS RECORDspecies: Brassica rapa
source: microPC, original name: miR166
Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGGACCAGGCTTCATTCCC miRNA* GAATGTTGTCTGGCTCGAG mismatches: 4 bulges: 0 |
pre-miRNA
GGGAATGTTGTCTGGCTCGAGGACTCTGGCTCTATCAACTCATGTTGGATCTTCTTCGATCTAATCGAATCAAACCTCTATGTTTGAGATCTGATTAGGG
TTTTAGTGTCGTCGGACCAGGCTTCATTCCC
dot-bracket secondary structure
(((((((..((((((..(((.(((.((((((((((((..((..((((((((......))))))))....((((((......))))))))..))).)))))
)..))).))).)))..))))))..)))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGGAATGTTGTCTGGCTCGAGGACTCTGGCTCTATCAACTCATGTTGGATCTTCTTCGATCTAATCGAATCAAACCTCTATGTTTGAGATCTGATTAGGG
TTTTAGTGTCGTCGGACCAGGCTTCATTCCC
dot-bracket secondary structure
(((((((..((((((..(((.(((.((((((((((((..((..((((((((......))))))))....((((((......))))))))..))).)))))
)..))).))).)))..))))))..)))))))
SIMILARITIES| miRBase aly-MIR166a: 9e-33 PMRD bna-miR166a: 6e-31 microPC miR166: 0.0000000004 | UniProt no hits RFAM mir-166: 6e-22 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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