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Species belonging to selected taxon:
Brassica napus
,
Brassica oleracea var. alboglabra
,
Brassica rapa
,
Raphanus raphanistrum
,
Raphanus raphanistrum subsp. landra
,
Raphanus raphanistrum subsp. maritimus
,
Raphanus sativus
,
Raphanus sativus var. oleiformis
,
Thellungiella halophila
,
Arabidopsis thaliana
,
Brassica oleracea
ABOUT THIS RECORD
ID:
MNEST045518
species:
Brassica rapa
source:
microPC, original name:
miR166
Taxonomy by NCBI:
Brassica rapa
Brassica
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CGGACCAGGCTTCATTCCC
miRNA*
GAATGTTGTCTGGCTCGAG
mismatches:
4
bulges:
0
View larger
pre-miRNA
GG
GAATGTTGTCTGGCTCGAG
GACTCTGGCTCTATCAACTCATGTTGGATCTTCTTCGATCTAATCGAATCAAACCTCTATGTTTGAGATCTGATTAGGG
TTTTAGTGTCGT
CGGACCAGGCTTCATTCCC
dot-bracket secondary structure
((
(((((..((((((..(((.
(((.((((((((((((..((..((((((((......))))))))....((((((......))))))))..))).)))))
)..))).))).)
))..))))))..)))))))
SIMILARITIES
miRBase
aly-MIR166a
:
9e-33
PMRD
bna-miR166a
:
6e-31
microPC
miR166
:
0.0000000004
UniProt
no hits
RFAM
mir-166: 6e-22
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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