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ABOUT THIS RECORD
ID:
MNEST045530
species:
Saccharum officinarum
miRNA family:
MIR396
source:
microPC, original name:
miR396
Taxonomy by NCBI:
Saccharum officinarum
Saccharum officinarum complex
Saccharum
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTCCACAGCTTTCTTGAACT
miRNA*
TTCAATAAAGCTGTGGGA
mismatches:
1
bulges:
0
View larger
pre-miRNA
TTCCACAGCTTTCTTGAACT
GCATCTCTAAGAGGAGCAGCTCGAAGCCTCGAACTCTACCTGCATGAGCAGGTGCAG
TTCAATAAAGCTGTGGGA
dot-bracket secondary structure
((((((((((((.(((((((
((((((((..((((((.((.((((....)))).)))).))).)...)).))))))))
))))).))))))))))))
SIMILARITIES
miRBase
ssp-MIR396
:
5e-49
PMRD
sof-miR396
:
5e-49
microPC
miR396
:
5e-49
UniProt
no hits
RFAM
MIR396: 1e-28
Identical with:
sof-MIR396
from miRBase (
MNEST042461
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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