miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor

ABOUT THIS RECORD

ID: MNEST045530
species: Saccharum officinarum
miRNA family: MIR396
source: microPC, original name: miR396

Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TTCCACAGCTTTCTTGAACT

miRNA*
TTCAATAAAGCTGTGGGA

mismatches: 1
bulges: 0

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pre-miRNA
TTCCACAGCTTTCTTGAACTGCATCTCTAAGAGGAGCAGCTCGAAGCCTCGAACTCTACCTGCATGAGCAGGTGCAGTTCAATAAAGCTGTGGGA

dot-bracket secondary structure
((((((((((((.(((((((((((((((..((((((.((.((((....)))).)))).))).)...)).))))))))))))).))))))))))))

UniProt no hits

RFAM MIR396: 1e-28

Identical with: sof-MIR396 from miRBase (MNEST042461)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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