ABOUT THIS RECORDspecies: Solanum lycopersicum
source: microPC, original name: miR172
Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAATCTTGATGATGCTGCA miRNA* TGGCATAATCAAGATTCAC mismatches: 4 bulges: 0 |
pre-miRNA
ATGTGGCATAATCAAGATTCACGTGAAAAGTTGCAAATTGGTTATATAATTGATGAAATTAATGGCTGGCTATTTGAAACTCACGAGAATCTTGATGATGC
TGCA
dot-bracket secondary structure
).(..((((.((((((((((.(((((...(((.(((((..(((((.(((((.....))))))))))..)...)))).)))))))).)))))))))).))))
..).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
ATGTGGCATAATCAAGATTCACGTGAAAAGTTGCAAATTGGTTATATAATTGATGAAATTAATGGCTGGCTATTTGAAACTCACGAGAATCTTGATGATGC
TGCA
dot-bracket secondary structure
).(..((((.((((((((((.(((((...(((.(((((..(((((.(((((.....))))))))))..)...)))).)))))))).)))))))))).))))
..).
SIMILARITIES| miRBase sly-MIR172a: 2.0E-54 PMRD sly-miR172a: 2.0E-54 microPC miR172: 2.0E-54 | UniProt no hits RFAM no hits |
Identical with: sly-MIR172a from miRBase (MNEST041542), sly-miR172a from PMRD |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
