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Species belonging to selected taxon:
Solanum habrochaites
,
Solanum lycopersicum
,
Solanum melongena
,
Solanum pennellii
,
Solanum torvum
,
Solanum tuberosum
ABOUT THIS RECORD
ID:
MNEST045550
species:
Solanum lycopersicum
source:
microPC, original name:
miR172
Taxonomy by NCBI:
Solanum lycopersicum
Lycopersicon
Solanum
Solaneae
Solanoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GAATCTTGATGATGCTGCA
miRNA*
TGGCATAATCAAGATTCAC
mismatches:
4
bulges:
0
View larger
pre-miRNA
TG
TGGCATAATCAAGATTCAC
GTGAAAAGTTGCAAATTGGTTATATAATTGATGAAATTAATGGCTGGCTATTTGAAACTCACGA
GAATCTTGATGATGC
TGCA
dot-bracket secondary structure
.(
..((((.((((((((((.(
((((...(((.(((((..(((((.(((((.....))))))))))..)...)))).)))))))).
)))))))))).))))
..).
SIMILARITIES
miRBase
sly-MIR172a
:
2e-54
PMRD
sly-miR172a
:
2e-54
microPC
miR172
:
2e-54
UniProt
no hits
RFAM
no hits
Identical with:
sly-MIR172a
from miRBase (
MNEST041542
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
download this record