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ABOUT THIS RECORD

ID: MNEST045550
species: Solanum lycopersicum
source: microPC, original name: miR172

Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GAATCTTGATGATGCTGCA

miRNA*
 TGGCATAATCAAGATTCAC

mismatches: 4
bulges: 0
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pre-miRNA
 TGTGGCATAATCAAGATTCACGTGAAAAGTTGCAAATTGGTTATATAATTGATGAAATTAATGGCTGGCTATTTGAAACTCACGAGAATCTTGATGATGC
TGCA

dot-bracket secondary structure
.(..((((.((((((((((.(((((...(((.(((((..(((((.(((((.....))))))))))..)...)))).)))))))).)))))))))).))))
..).


SIMILARITIES
miRBase sly-MIR172a: 2e-54

PMRD sly-miR172a: 2e-54

microPC miR172: 2e-54		UniProt no hits

RFAM no hits

Identical with: sly-MIR172a from miRBase (MNEST041542)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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