ABOUT THIS RECORDspecies: Carica papaya
source: microPC, original name: miR535
Taxonomy by NCBI:
Carica papaya Carica Caricaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAACGAGAGAGAGCACGCT miRNA* CGTGCTCTATGTCGTTGTCA mismatches: 3 bulges: 0 |
pre-miRNA
TGACAACGAGAGAGAGCACGCTTGTTATCACTCATCCGAGGTATATGATTGTGTACGGGCGTGCTCTATGTCGTTGTCA
dot-bracket secondary structure
.((((((((.(.(((((((((((((...((.((((.........)))).))...))))))))))))).).)))))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGACAACGAGAGAGAGCACGCTTGTTATCACTCATCCGAGGTATATGATTGTGTACGGGCGTGCTCTATGTCGTTGTCA
dot-bracket secondary structure
.((((((((.(.(((((((((((((...((.((((.........)))).))...))))))))))))).).)))))))).
SIMILARITIES| miRBase vvi-MIR535c: 0.00000000006 PMRD vvi-miR535e: 0.00000000006 microPC miR535: 1e-39 | UniProt no hits RFAM MIR535: 2e-38 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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