miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea

ABOUT THIS RECORD

ID: MNEST045565
species: Carica papaya
source: microPC, original name: miR535

Taxonomy by NCBI:
Carica papaya Carica Caricaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TGACAACGAGAGAGAGCACGCT

miRNA*
CGTGCTCTATGTCGTTGTCA

mismatches: 3
bulges: 0

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pre-miRNA
TGACAACGAGAGAGAGCACGCTTGTTATCACTCATCCGAGGTATATGATTGTGTACGGGCGTGCTCTATGTCGTTGTCA

dot-bracket secondary structure
.((((((((.(.(((((((((((((...((.((((.........)))).))...))))))))))))).).)))))))).

UniProt no hits

RFAM MIR535: 2e-38

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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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